Subset, translate, or reorder chromosome IDs

Subset, translate, or reorder chromosome IDs

Usage

select_chromosomes(fragments, chromosome_selection)

Arguments

fragments

Input fragments object

chromosome_selection

List of chromosme IDs (numeric), or names (character), or logical mask.

Details

Numeric chromosome IDs will be re-assigned in the order of chromosome_selection. The output chromosome ID n will be taken from the input chromosome with ID/name chromosome_selection[n].