TSS Enrichment vs. Fragment Counts plot — plot_tss

Density scatter plot with log10(fragment_count) on the x-axis and TSS enrichment on the y-axis. This plot is most useful to select which cell barcodes in an experiment correspond to high-quality cells

Usage

plot_tss_scatter(
  atac_qc,
  min_frags = NULL,
  min_tss = NULL,
  bins = 100,
  apply_styling = TRUE
)

Arguments

atac_qc: Tibble as returned by qc_scATAC(). Must have columns nFrags and TSSEnrichment
min_frags: Minimum fragment count cutoff
min_tss: Minimum TSS Enrichment cutoff
bins: Number of bins for density calculation
apply_styling: If false, return a plot without pretty styling applied