Count fragments by nucleosomal size

Usage

nucleosome_counts(fragments, nucleosome_width = 147)

Arguments

fragments: Fragments object
nucleosome_width: Integer cutoff to use as nucleosome width

Value

List with names subNucleosomal, monoNucleosomal, multiNucleosomal, and nFrags, containing the count vectors of fragments in each class per cell.

Details

Shorter than nucleosome_width is subNucleosomal, nucleosome_width to 2*nucleosome_width-1 is monoNucleosomal, and anything longer is multiNucleosomal. The sum of all fragments is given as nFrags